MassWorks is a unique software that can help you to correctly identify your unknown compound. Both programs below are included in Massworks.
For a tutorial video click here.

• With CLIPS, used for low resolution MS-data you can correctly calibrate and identify your compound with of not only accurate mass moreover spectral accuracy.
• sCLIPS, for use with high resolution instruments do not need any calibration but still boost your data. Application Notes.
• First experiment LC/GC/MS setup 1 and Calibration setup 2

Mnova MS, is a software providing a common interface for different vendor data and automating all functionality (data read in and display, integration, background subtraction and complicated computational analysis), Mnova MS opens the power of the technique to all non expert users.

If you have a structure search for it in your raw-data using both MS and MS/MS data.
Can easily be combined with NMR-process, -prediction and DataBase.

To watch video click here.

AutoID is a new software for automatic formula determination from walk-up environment.
Based on MassWorks, CLIPS (above).

Today for Waters quadrupole systems, but more vendors will be supported later.

Apex is a chemical structure-based small molecule confirmation software for metabolite identification, combinatorial chemistry, chemical synthesis, target compound analysis, affinity binding, and more.

On of the fastest software on the market for target analysis.

Sierra also have other software like Polymerix for poymer analysis, DXMS for H/D-Exchange for finding and determining peptide deuteration levels in complex LC/MS datasets
Composer for petroleum analysis